Main
Wiesław Abramowicz, M.S.
Currently searching for a full-time position.
Education
Ph.D. Studies in Pharmaceutical Sciences (unfinished)
The Centre for Innovative Research 2012-2017, Faculty of Medicine with the Division of Dentistry and Division of Medical Education in English, Faculty of Pharmacy and Division of Laboratory Medicine, Medical University of Białystok
PL
08/2017 - 10/2013
Research area: Transcriptomics profiling of cancer cell line after drugs treatment using bioinformatic open-source tools.
Advisor: Prof. dr hab. Marzanna Cechowska-Pasko, Ph.D.
M.Sc. in Medical Analitics, PQF 7
Faculty of Pharmacy and Division of Laboratory Medicine, Medical University of Białystok
PL
09/2013 - 10/2007
Master’s thesis: Expression of the APRIL particle in neutrofils of patients with potentially malignant lesions of the oral mucosa.
Advisor: Prof. dr hab. Ewa Jabłońska, Ph.D.
Co-Advisor: dr Kamil Grubczak, Ph.D.
Dean’s leave (10/2008 - 09/2009)
Pharmaceutical Assistant, PQF 4
Vocational School No. 1 of Health Care
Białystok, PL
08/2007 - 09/2005
Employment
Pharmaceutical Assistant
Pharmacy “Lobelia” Barbara Winsko.
Białystok, PL
09/2009 - 09/2008
Professional membership
The Right to Practice the Profession in Laboratory Diagnostic. No 13786
N/A
KIDL, Warsaw
Present - 20/01/2014
Research Experience
Ph.D. Student (unfinished)
The Centre for Innovative Research 2012-2017, Medical University of Białystok
PL
08/2017 - 10/2013
- Performed laboratory and computational biology research on the effects of Ixazomib and Ursolic acid in the human transcriptome of the cancer cell line. [not published]
- Performed DNA sequencing with co-operation of Prof. Rafał Płoski using KAPA library. [not published]
Projects
Transcriptomic profiling of a human kidney cancer cell line, Caki-2, after treatment of Ixazomib, Ursolic acid and jointly using microarray technique.
Advisor: Prof. Marzanna Cechowska-Pasko, Ph.D. Manuscript in preparation.
Department of Pharmaceutical Biochemistry, Medical University of Białystok.
Currently - 10/2013
DNA sequencing of clear cell renal cell carcinoma and healthy kidney area. “Genome-wide methods in cancer genetics”. BASTION.
Co-operation: Prof. Rafał Płoski, MD, Ph.D. (Department of Medical Genetics, Medical University of Warsaw). Advisor: Prof. Marzanna Cechowska-Pasko, Ph.D. Manuscript in preparation.
Department of Pharmaceutical Biochemistry, Medical University of Białystok.
Currently - 10/2014
Wet Lab
Laboratory Experience
Interested in Oncology, Immunology, EpiOmics.
Medical University of Białystok, PL
N/A
- BIO-RAD CFX Connect Real-Time PCR;
- Agilent’s microarray;
- NanoDrop 2000;
- DNA, RNA extraction from cells;
- Agilent 2100 Bioanalyzer (DNA, RNA, protein microcapillary electrophoresis, flow cytometry);
- DNA, RNA gel electrophoresis;
- Western blot;
- Northern blot;
- PMN cells isolation;
- cells counting chambers;
- setting up cell cultures;
- optical microscope;
Courses:
A&A Biotechnology
Gdańsk, PL
22/ - 25/09/2014
- “Real-Time PCR”
- “Real-Time PCR - quantitative markings”
Data Science Courses
“Exploratory Data Analysis”
N/A
Johns Hopkins University
11/2018
- lattice.
- ggplot2.
- Clustering.
- Dimension Reduction.
“NGS in Regulatory Gene Research”
ideas4biology.com
Poznań, PL
06/2016
Coordinator: dr Michał Szczesniak, Ph.D.
Techniques: ChIP-chip, ChIP-Seq, ChIP-exo, CLIP-Seq, DNase-Seq, FAIRE-Seq, GRO-Seq, HiC, MeDIP-Seq, MBD-Seq, MNase-Seq, oxBS-Seq, RIP-Seq, RRBS-Seq, TAB-Seq, TSS-Seq, WGBS-Seq.
Linux. WinSCP, PuTTY.
Softwares: POLYPHEMUS, ChromHMM, Segway, MACE, DANPOS2, MeDUSA, diffReps, BSMAP, methylKit, Trimmomatic, Subread, BamTools.
Databases: OMICtools, AllSeq, ChIPBase, hmChIP, mirPath, miRTarBase.
“Getting and Cleaning Data”
N/A
Johns Hopkins University
02/2016
- MySQL.
- HDF5.
- dplyr.
- Regular Expressions.
“The Data Scientist’s Toolbox”
N/A
Johns Hopkins University
01/2016
- Version Control (Git, GitHub).
- R Markdown.
In Silico
Biostatistic experience
Interested in Oncology, Immunology, EpiOmics.
N/A
N/A
- R packages (limma, RSubread, Gviz, biomaRt, etc.)
- basics of MySQL;
- basics of Python (PyScripter, PyMol, PyLasso, Autodock/Vina);
- Agilent’s GeneSpring GX;
- CLC Main Workbench;
- Pathway Analysis (GO, KEGG, Reactome, WikiPathways, HumanCyc, clusterProfiler, rSEA);
- Machine Learning (Random forest, CatBoost, LightGBM, XGBoost, H2O);
- Neural Networks (TensorFlow, Keras, etc.);
- Multivariate Analysis (PCA, tSNE, UMAP, SONG, NMF, Ricci flow);
- Comparative Analysis (Venn diagram);
Student membership
Active participant of Student’s Scientific Society at the Department of Immunology.
Advisor: Prof. Ewa Jablonska, Ph.D.
Medical University of Białystok, PL
06/2013 - 10/2009
Active participant of Student’s Scientific Society at the Department of Pharmaceutical Biochemistry
Advisor: dr hab. Malgorzata Borzym-Kluczyk, Ph.D.
Medical University of Białystok, PL
2011 - 2010
Publications and Posters
Tylirozyd, a flavonoid with cytotoxic properties. Poster presentation.
Nationwide Scientific Symposium “Supplements a deity under the microscope of a pharmacist”.
Medical University of Bialystok, PL
2013
Abramowicz W.
APRIL molecule in patients with potentially malignant lesions of the oral mucosa (lichen planus).
7th International Medical Congress for Young Scientists, Białystok, p.185
N/A
2012
Abramowicz W., Wawrusiewicz-Kurylonek N., Garley M.
Alpha-mannosidase and beta-galactosidase activity in the serum of patients with colorectal adenocarcinoma.
5th International Scientific Conference of Medical Students and Young Doctors, Białystok, p.132-133
N/A
2010
Luto M., Choromańska B., Chwiła A., Wasiluk A., Abramowicz W.
Assessment of the activity of N-acetyl-beta-D-hexosaminidase, it’s B enzyme and betaglucuronidase in the urine of patients with Lyme disease.
5th International Scientific Conference of Medical Students and Young Doctors, Białystok, p.127
N/A
2010
Choromańska B., Luto M., Abramowicz W., Chwiła A., Wasiluk A.
The activity of N-acetyl-beta-hexosaminidase, it’s N-isoenzyme and beta-glucuronidase in the blood serum of patients suffering from Lyme disease.
5th International Scientific Conference of Medical Students and Young Doctors, Białystok, p.128
N/A
2010
Chwiła A., Luto M., Choromańska B., Wasiluk A., Abramowicz W.
Alanine and aspartic aminotransferase activity in blood serum of men after acute and chronic ethyl alcohol poisoning.
5th International Scientific Conference of Medical Students and Young Doctors, Białystok, p.137-138
N/A
2010
Wasiluk A., Abramowicz W., Luto M., Choromańska B., Chwiła A.
Organizational skills
Co-organizer of the 8th Białystok International Medical Congress for Young Scientists as a member of the board of the Students’ Scientific Society
Coordinator of Belarusian participants.
Medical University of Białystok, PL
2013
Co-organizer of the 7th Białystok International Medical Congress for Young Scientists as a member of the board of the Students’ Scientific Society
Coordinator of Belarusian participants.
Medical University of Białystok, PL
2012
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Last updated on 2020-07-03.